FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576476
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19550.3391294693968179No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10580.18352888932063086No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.16895759754092105No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8180.14189662709288853No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8100.14050888501863046No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7730.13409057792518683No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7380.12801920635030772No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6250.10841734955141238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)