FastQCFastQC Report
Sun 21 May 2023
EGAF00007942283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546195
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27430.5022015946685707No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24190.44288212085427364No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT22040.40351888977379874No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13560.24826298300057673No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13290.24331969351605195No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13110.24002416719303546No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12830.23489779291278756No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10490.192055950713573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10180.18638032204615568No Hit
GCCGTTTTCGATAAAACCGGCAATAGCACCGAAGATGCCACGGG10090.18473255888464743No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9440.1728320471626434No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9000.16477631615082525No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8060.14756634535285018No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7880.14427081902983369No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7300.13365190087789158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.1332857312864453No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7230.13237030730782964No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6740.1233991523173958No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6700.12266681313450326No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6660.12193447395161068No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA6650.12175138915588755No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6620.12120213476871813No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6450.11808969324142476No Hit
TTCAATAAAACCAGCGATTGCACCGAAGATACCACGGGTCTGCT6390.11699118446708594No Hit
TTTCAGATCTGCCGCCTGGCCAGTACCTTCGGAGTTCTGGTGAC6230.1140618277355157No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6130.11223097977828432No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6000.1098508774338835No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5890.10783694468092897No Hit
GAAGATACCACGGGTCTGTTTTTCCGGGACGTTACGCATGCCGG5890.10783694468092897No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5840.10692152070231327No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5690.10417524876646618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)