FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546195
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61081.1182819322769342No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44900.8220507327968949No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30000.5492543871694175No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT23420.42878459158359195No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18580.34017155045359254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14980.27426102399326246No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13590.24881223738774613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13210.24185501515026683No Hit
CCGAATGACAAACCATTCCAGAACGTTAACC11070.20267486886551508No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10980.2010271057040068No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9950.1821693717445235No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8660.1585514330962385No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8210.15031261728869727No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7860.1439046494383874No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7800.14280614066404856No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7270.13310264649072218No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6990.12797627221047428No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6920.1266946786404123No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT6700.12266681313450326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6680.12230064354305696No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6530.11955437160720989No Hit
AAGCTGGCTACCGGTATGCGCAACGTCCCGG6510.1191882020157636No Hit
TCCATTCCGAACGACAAACCATTCCAGAACG6510.1191882020157636No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6470.11845586283287105No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6340.11607576048847024No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.11552650610130082No Hit
TCTGAATGTATCACTCCGAACGGTTCCATTC5900.10802002947665212No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5740.10509067274508188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)