FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536612
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43870.817536693178684No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9850.1835590706134041No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8050.15001528105968556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7410.13808860032947456No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6920.12895723539540674No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6350.11833503537006253No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6080.11330346693700477No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5700.10622200025344197No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5690.1060356458670324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)