FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556873
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA43550.7820454574023161No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA37850.679688187432323No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25910.4652766429688636No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG22160.39793633377807863No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT21530.3866231618340268No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18990.3410113257421351No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT18150.32592709648339924No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG16350.29360374807182243No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16100.28911439412577017No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG13740.2467348928750361No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT12640.2269817355124059No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12470.2239289748290903No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12280.22051706583009054No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA12160.21836217593598542No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11850.2127953770428805No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT11800.21189750625367007No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11210.20130263094098655No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT10900.19573583204788164No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10850.1948379612586712No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10740.19286264552240817No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10450.18765499494498744No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG10100.18136989942051418No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9830.17652139715877765No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT9690.17400735894898836No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9680.17382778479114627No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC9470.17005672747646233No Hit
AGACGCCGGACCGATACGGCTGGCCCACGGACGGCTAGTGCCCG9310.16718354095098883No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9220.16556737353040998No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8410.15102186674520043No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7790.13988826895899065No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7730.1388108240119381No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7730.1388108240119381No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7590.1362967858021488No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7470.13414189590804365No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG7420.13324402511883318No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7130.1280363745414125No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6480.11636405428167643No Hit
GGAGACAACCAGCTCGTCTTCACCGTTCGGCGGAGGCGGCGGGA6430.11546618349246597No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6370.1143887385454134No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA6220.111695126177782No Hit
GCTCACAACCAGTTCGTCTTCGCCGTTAGGCGGCGGCGGCGGAA6160.11061768123072944No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6150.11043810707288734No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6150.11043810707288734No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6110.10971981044151898No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6090.1093606621258348No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6050.10864236549446643No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6040.10846279133662431No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA5690.10217769581215105No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5640.10127982502294061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)