FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences591959
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG32360.5466594814843595No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26080.44057105306279654No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24710.41742755832751927No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24330.4110081948243037No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23080.38989186751109456No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22700.38347250400787897No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG20370.344111669896057No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19120.32299534258284784No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17680.29866933351803077No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17150.2897160107372301No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15530.262349250539311No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15260.2577881238396578No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14410.24342902126667557No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13650.23059029426024438No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13600.229745641167716No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13420.22670489003461392No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13270.2241709307570288No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12500.21116327313209193No Hit
ACCCTGCGGGCCCACGTCACCGTCCGCGCCTTTGAACAGTGCCC12060.2037303259178423No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11000.1858236803562409No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10990.18565474973773521No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10890.1839654435526785No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT10450.17653249633842882No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10420.17602570448291183No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9860.16656558984659411No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9360.15811905892131042No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA9070.1532200709846459No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8990.1518686260366005No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8760.14798322181097No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8750.14781429119246434No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8690.14680070748143031No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8200.1385231071746523No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7960.13446877233051616No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7940.13413091109350478No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7790.13159695181591968No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC7770.13125909057890833No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7240.12230576779810765No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7170.12112325346856792No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG6970.11774464109845445No Hit
CGCATCCAGATCTACGGTCTCACCCTGGTTCAGAGCTTCGTTCA6940.11723784924293744No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6930.11706891862443176No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6760.11419709810983532No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG6160.10406126099949489No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6090.10287874666995518No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6010.1015273017219098No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5970.1008515792478871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)