FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences591959
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50940.8605325706679009No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34790.5877096217812382No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32560.5500380938544731No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT31860.5382129505590759No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26870.45391657192474477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26470.4471593471845179No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25090.42384692183073486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23510.3971558841068385No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20040.33853695948536977No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG19510.3295836367045691No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19250.32519144062342153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15900.2685996834240209No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15810.26707930785746986No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14510.2451183274517323No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14390.24309116002966422No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14130.2386989639485167No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13950.2356582128154146No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13170.22248162457197204No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12820.21656905292427348No Hit
GCCAACGACGTCTCCGGTCAGTCTGGCTTCA12540.2118389956061146No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11910.2011963666402572No Hit
AAACAGCCAACCACCACCTCCCCGATCCACA11240.18987801520037706No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10260.17332281458682103No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10150.17146457778325863No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9680.16352483871349197No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9610.16234232438395227No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9490.16031515696188417No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9440.15947050386935582No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9240.15609189149924235No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8840.14933466675901538No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8470.14308423387430547No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8410.14207065016327144No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8290.14004348274120335No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG8260.13953669088568632No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8180.13818524593764095No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8110.13700273160810122No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7440.12568438016822112No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7340.12399507398316437No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7180.1212921840870736No Hit
CTGGACAAACTGACTCAGTCCCTGGACTCCG7090.11977180852052255No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7050.11909608604649984No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6650.1123388613062729No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6480.10946704079167645No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG6410.10828452646213674No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6350.1072709427511027No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6000.10135837110340414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)