FastQCFastQC Report
Wed 31 May 2023
EGAF00007942292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530916
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT72531.3661294818766057No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16510.3109719805016236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13240.2493803162835552No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11030.20775414566522762No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10870.204740486253946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8900.1676348047525409No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8590.16179583964318273No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8040.1514363854169021No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7970.1501179094244664No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7540.14201869975664702No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7320.13787491806613475No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6940.13071747696434088No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.10510137196844699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5480.10321783483639596No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5420.10208771255716534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)