FastQCFastQC Report
Wed 31 May 2023
EGAF00007942294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575908
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48210.8371128721948645No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12600.21878494481757504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11970.20784569757669627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11160.19378095112413787No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7850.1363064933982511No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7130.12380449655153254No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6650.11546983198705348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)