FastQCFastQC Report
Sun 21 May 2023
EGAF00007942296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375149
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61701.6446798472073765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24640.6568056958701742No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11280.3006805296029045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9990.26629419244087016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6580.17539697560169426No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5920.15780396589088602No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5720.15247275082700473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)