FastQCFastQC Report
Wed 31 May 2023
EGAF00007942297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395591
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9570.24191652489566245No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7880.19919563387438033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7590.19186483008966332No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6410.16203604227598706No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6330.16001375157675476No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5810.1468688620317449No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5800.14661607569434087No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5320.13448233149894714No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4550.11501778351883639No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4520.11425942450662427No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4430.11198434746998794No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG3990.10086174862421035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)