FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395591
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65041.64412233847585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12260.30991604965734815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12230.309157690645136No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8760.22144083156593553No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8450.2136044551064104No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7450.1883258213660068No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7130.18023665856907767No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6580.16633341001185567No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6320.15976096523935077No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5170.13069053643788658No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4650.11754564689287675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)