FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387358
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55351.4289107234134832No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42311.0922712322967385No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29690.7664744241760852No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25150.6492701841707155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19780.5106387372921174No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19280.4977307813443894No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18090.4670098461887969No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17530.4525529355273416No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17470.45100398081361426No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17450.45048766257570516No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG17320.4471315940292959No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11880.3066930333180159No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11620.29998089622519736No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11250.2904290088238787No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10540.272099711378105No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8430.2176281372786931No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7460.1925867027401009No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7430.19181222538323722No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6920.17864611031655472No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6500.16780342732046324No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6480.16728710908255412No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6440.1662544726067359No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6100.1574770625622809No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6010.15515363049168987No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5960.15386283489691707No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5820.15024860723155323No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5720.14766701604200766No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5510.14224567454396192No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.13785696952173443No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5090.13140299154787044No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4910.1267561274066884No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4810.12417453621714279No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4720.12185110414655177No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4560.11772055824327884No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4360.11255737586418765No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4320.1115247393883694No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4290.11075026203150573No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4170.10765235260405104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)