FastQCFastQC Report
Wed 31 May 2023
EGAF00007942309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398059
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30520.766720511280991No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC27250.6845718850723134No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23640.5938818114902565No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21250.5338404608362076No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18510.4650064437683861No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13040.3275896286731364No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10170.2554897640801992No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9640.24217515493934316No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9200.23112151716202875No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8300.2085118035266129No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8150.20474351792071024No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6770.17007529034640592No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6520.1637948143365682No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA6370.16002652873066556No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG5650.14193875782233287No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5330.13389974852974057No Hit
CGGCTTAACCGCGATGGAACGGCGGCGACGACGGCCAGCGTATA5240.13163877716619898No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5220.13113633908541195No Hit
GCGCAGTGCACGGCGTGCACGACGCGGGGAGGCAGCTTCAACTG5000.12560952019675475No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4980.12510708211596774No Hit
CGGTTTTACCGCGATGGAACGGCGACGACGGCGACCAGCGTAAA4770.11983148226770404No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4660.11706807282337542No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG4340.10902906353078314No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4250.10676809216724154No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4240.10651687312684803No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4110.10325102560173241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)