FastQCFastQC Report
Sun 21 May 2023
EGAF00007942310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398059
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62281.564592183570777No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55141.3852217887298113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29530.7418498262820336No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG27000.6782914090624756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18730.4705332626570433No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12770.32080671458251164No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10850.2725726588269578No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10120.2542336688782316No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9250.2323776123639963No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8250.20725570832464535No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8090.2032362036783492No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6630.1665582237808968No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT6300.15826799544791098No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG5980.15022898615531868No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5370.1349046246913146No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5230.13138755812580546No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG4910.12334854883321318No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4870.12234367267163913No Hit
GCGGGTGGTGCTCTGTCTCTGGCCGCAGCTG4800.12058513938888456No Hit
GGTGAAATGGGCACCCCTGGTCCGAAGGGCG4580.11505832050022735No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4540.11405344433865332No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4450.11179247297511173No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4410.1107875968135377No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4380.11003393969235715No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG4190.10526077792488049No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG4140.10400468272291294No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4110.10325102560173241No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG4090.10274858752094539No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4060.10199493039976487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)