FastQCFastQC Report
Wed 31 May 2023
EGAF00007942311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391648
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10700.2732045101723997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9860.25175667946727676No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9180.23439414984884385No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7840.20017975324781437No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7760.19813710270446933No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6990.17847659122477327No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5850.14936882098210638No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5190.13251695399950977No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5160.13175096004575537No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5140.1312402974099191No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5130.13098496609200097No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4630.11821840019609446No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4580.1169417436065038No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4570.11668641228858567No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4410.11260111120189559No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG3980.10162186453141597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)