FastQCFastQC Report
Sun 21 May 2023
EGAF00007942312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391648
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20470.5226632077784132No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20220.51627992483046No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20110.5134712803333605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9850.25150134814935865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9240.23592613775635266No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8710.2223935779066917No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7890.201456409837405No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5380.13736824903995423No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5300.1353255984966092No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5070.1294529781844922No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5040.12868698423073782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4930.12587833973363838No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4850.12383568919029332No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4510.11515442438107688No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG4110.10494117166435166No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4060.103664515074761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)