FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417926
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62401.4930872929657402No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54211.2971195857639868No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20780.4972172107023731No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19810.4740073601546685No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19090.45677942985121767No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG18330.4385943923086862No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15130.36202581318223803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14400.344558606069017No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14140.3383374090149931No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13940.3335518728195901No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11960.2861750644851002No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11750.28115025147992706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11530.27588616166498375No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10990.2629652139373956No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA10590.25339414154658957No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10400.24884788216095674No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10210.24430162277532386No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10130.24238740829716265No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9340.22348454032532072No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8770.20984576216842216No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7790.1863966348109474No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7770.1859180811914071No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7340.1756291783712906No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7190.17204002622473835No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6600.15792269444829946No Hit
ACCCGCCACATTGACGCAAAAGCAGTTTACG6440.15409426549197705No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6350.15194077420404567No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6110.14619813076956206No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6020.1440446394816307No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5890.14093404095461876No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5550.13279862942243362No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5450.13040586132473214No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5000.11963840488507535No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4860.11628852954829325No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4640.11102443973334992No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4580.10958877887472902No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA4480.10719601077702752No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4470.10695673396725737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)