FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412585
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25170.6100561096501327No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23200.5623083728201462No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21350.5174691275737121No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20990.5087436528230547No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA14440.3499884872208151No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12320.298605135911388No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11680.28309318079910806No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT9930.2406776785389677No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9520.23074033229516341No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8270.20044354496649175No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8220.19923167347334492No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8130.1970503047856805No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7910.1917180702158343No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7810.1892943272295406No Hit
ATCAGAGGATTTCGCATCGTTTTCTTTTTTATCCGGGGTTGCCA7600.18420446695832374No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7480.18129597537477124No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7330.17766036089533066No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7020.17014675763782008No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6880.16675351745700887No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG6410.15536192542142832No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6260.1517263109419877No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6250.15148393664335832No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6160.149302567955694No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6010.14566695347625339No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5860.14203133899681278No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5820.14106184180229528No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5680.13766860162148406No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5640.1366991044269666No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5440.1318516184543791No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5280.12797362967630913No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5240.12700413248179163No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5210.12627700958590352No Hit
GACTACCATGCTGTCTTTAACGAAGGTGGAGCAGTGATACAGTT5210.12627700958590352No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5050.12239902080783352No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5010.12142952361331603No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4960.12021765212016917No Hit
TTTACCACGTTTGCTGCGGCCCTTACGAGACGGCAGTTTGCCAG4870.11803628343250482No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4850.11755153483524607No Hit
TTCGTCACCGGTGCTCGGCAGCTTACGCTTGTTGTTAGTGGATT4850.11755153483524607No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4680.11343117175854672No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4670.11318879745991735No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4650.1127040488626586No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4500.10906843438321802No Hit
ACGGCCACCGCGCGGCGCCGCATCATCACGCATCAGTTCTGCCA4500.10906843438321802No Hit
TTCCCAGGCGTCGGACGCTGCGTTATCAGACTGAACAACTTCCG4440.10761418859144177No Hit
GTAACCGTCGATGAAACGAACTTCATCCCAGGTGGTCGGTACTT4390.1064023170982949No Hit
TTCCGGACGGTTAGTGGCCGCCAGAATGATTACGCCGTTGTTAC4350.10543281990377741No Hit
AACGTCATTTTTGCGCGCCTGTACTGGGTGTTTAACCACAATCG4270.10349382551474243No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4190.10155483112570744No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4170.10107008252844868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)