FastQCFastQC Report
Wed 31 May 2023
EGAF00007942320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441891
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34980.791597927995818No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17270.3908203606771805No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16170.3659273440735385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12870.2912482942626123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12750.28853269245130586No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10650.24100966075344374No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10340.2339943560742355No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9430.21340104233849524No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7440.1683673123009973No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6930.15682600460294507No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6610.14958439977279464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5910.1337433892068406No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5600.12672808452763237No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4970.11247117501827374No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4880.11043447365979393No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4510.1020613680749325No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4490.1016087677730481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)