FastQCFastQC Report
Wed 31 May 2023
EGAF00007942321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485292
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11740.24191620714950995No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8350.1720613568737997No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7610.1568128054861815No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7580.15619462097046727No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7300.15042489882380095No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6250.12878844077380217No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6150.12672782572142133No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5950.12260659561665965No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5200.10715198272380341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)