FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447132
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22950.5132712487587558No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17200.3846738770653856No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16350.3656638308150613No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11580.2589839242103003No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9630.21537264163602696No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8640.19323152894447276No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8380.18741669126790297No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8260.18473292003256309No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7930.17735254913537835No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5990.13396491416405No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5980.133741266561105No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5840.13061020011987512No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5800.12971560970809515No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5730.1281500764874802No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5510.12322982922269038No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5170.11562581072256067No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4970.11115285866366086No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4670.1044434305753111No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4570.10220695454586116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)