FastQCFastQC Report
Sun 21 May 2023
EGAF00007942326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447132
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23160.5179678484206006No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22950.5132712487587558No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21300.4763693942728322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16960.3793063345947058No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12550.2806777416959645No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12300.27508655162233975No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9680.2164908796507519No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8800.19680989059159262No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8780.19636259538570264No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8350.18674574845906802No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7710.17243230187058853No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6570.1469364751348595No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6500.14537094191424457No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6080.1359777425905549No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5990.13396491416405No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5860.13105749532576508No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.12770278128159024No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5490.12278253401680041No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5340.11942781997262553No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5240.11719134394317561No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4880.10914003023715592No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4790.10712720181065098No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4730.10578531619298104No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4690.10489072578120108No Hit

[OK]Adapter Content

Adapter graph