FastQCFastQC Report
Sun 21 May 2023
EGAF00007942330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences281691
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42301.501645419981469No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38421.3639058400871877No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15180.538888356390513No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13710.48670351555427754No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11070.39298380139940575No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10260.3642288891018882No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9430.33476397896986415No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9110.32340401361775845No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7760.27547915978856263No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6570.23323428863541965No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6120.21725933735902103No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4610.1636545008537724No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4590.16294450301926577No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT4580.16258950410201248No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4500.15974951276398608No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4300.15264953441892No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT4140.1469695517428672No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3950.14022457231505442No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC3830.1359645853080148No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3730.1324145961354818No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG3700.13134959938372187No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3650.1295746047974554No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3410.12105463078337611No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3310.11750464161084308No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3310.11750464161084308No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3160.11217965785204355No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG2990.10614467625873741No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG2930.1040146827552176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)