FastQCFastQC Report
Wed 31 May 2023
EGAF00007942335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544161
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10620.19516282864813905No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9170.1685163030794195No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA7330.13470278097842367No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6820.1253305547439085No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5890.10824002455155735No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5510.10125679716113431No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5490.10088925887742782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)