FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544161
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50030.9193970166917512No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12210.22438212220280396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10600.19479529036443258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.17108907106536483No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7740.14223731579440643No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7440.1367242415388093No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7330.13470278097842367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6020.11062902339564946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5880.10805625540970412No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5490.10088925887742782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)