FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566267
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11620.20520355238783117No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11310.19972910305562572No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9840.17376961751258682No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7900.13951016040136544No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.12344000268424613No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6860.1211442658675148No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6810.12026129016877198No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6590.11637619709430358No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6270.11072515262234951No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5850.10330815675290986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)