FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543343
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52780.9713937604791081No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48720.8966711635191766No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19150.3524477171878537No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11860.21827832510955325No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8970.16508908737206515No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8530.15699107193798392No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7330.13490557529958055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.13435343788362047No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7240.13324916305170031No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7030.12938420113997973No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6820.1255192392282591No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6700.1233106895644188No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6550.12055000248461836No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6410.11797336121013799No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6120.11263603285585717No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5790.10656252128029625No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5460.1004890097047353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)