FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526901
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47930.9096585506575239No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19900.3776800575440168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18660.35414622481263086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18230.3459852989461018No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12020.22812634631553175No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11250.21351259534523565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9020.17118965422346893No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8980.17043049832890808No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8540.1620797834887389No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7840.14879455533392422No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6450.1224138879979351No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6020.1142529621314061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)