FastQCFastQC Report
Sun 21 May 2023
EGAF00007942346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533493
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46600.8734884993804979No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19790.3709514464107308No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19350.3627039155152926No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17990.33721154729302916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12730.23861606431574547No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11710.21949678814904786No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8870.16626272509667417No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8730.16363851072085295No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8470.15876496973718493No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8330.15614075536136368No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6350.11902686633189188No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5940.1113416670884154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)