FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423443
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26290.6208627843653101No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13880.32778910030393704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12480.2947267991205428No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10350.24442486946295014No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9580.2262406038120833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.21891966569290316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9020.21301568333872567No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8520.20120771863037057No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5810.13720854991108603No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5670.1339023197927466No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5380.12705370026190066No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4730.11170334614103905No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4600.10863327531686674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)