FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554072
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16580.29923908806075744No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG16550.29869764218368733No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14660.26458655192826924No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT13270.23949955962402No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12400.22379762918898627No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT12330.22253425547582262No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT11350.20484702349153178No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8720.1573802682683839No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8590.15503400280107998No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8360.15088291774354234No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG8330.15034147186647223No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8290.14961954403037872No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT7930.14312219350553718No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT7480.13500050534948527No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT7150.12904460070171386No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6960.1256154434802697No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6610.11929857491445155No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6410.11568893573398403No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5970.10774772953695548No Hit
GCCGCGGGTAATCTGGATCAGACGGTCAGAGTAGCCGCAGGCTT5870.10594290994672172No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT5710.1030551986023477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)