FastQCFastQC Report
Sun 21 May 2023
EGAF00007942352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554072
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCTGGTCTCCGCCATGGAACGCACCGAAC18340.3310039128488716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16400.29599041279833666No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16170.291839327740799No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16060.2898540261915419No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15350.2770398071008822No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG13510.24383112664058101No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG12840.23173883538601484No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT11880.2144125673197707No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9920.179038103351189No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9690.17488701829365136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9000.16243376312103844No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8470.1528682192927995No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8430.15214629145670597No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8300.1498000259894021No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG8210.14817568835819173No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT7950.14348315742358395No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC7260.131029902250971No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC7260.131029902250971No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG7050.1272397811114801No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6970.12579592543929308No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6660.12020098470956844No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6560.11839616511933468No Hit
GACGCAGCTTCCTCTGGTGCGAGCCGTCTGG6230.11244026047156326No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5980.10792821149597887No Hit
GACTTCAGCCAGGATCCGTCTAAGTTCACGG5900.10648435582379186No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5820.10504050015160485No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5730.10341616252039446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)