FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550433
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13120.2383578019486477No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9540.17331809684375754No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7750.14079824429131246No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7400.1344396139039629No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6910.12553753136167345No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6760.12281240405280934No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6110.11100351904773152No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6020.10936844266241305No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.10464488866038192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)