FastQCFastQC Report
Wed 31 May 2023
EGAF00007942354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550433
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13640.24780490995270996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12330.22400546478863007No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10340.18785210915769948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7980.1449767728315708No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7580.1377097666745998No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7420.13480296421181143No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.1335312381343415No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6830.12408413013027925No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6410.11645377366545974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6020.10936844266241305No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5850.10627996504570039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)