FastQCFastQC Report
Wed 31 May 2023
EGAF00007942358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527472
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35310.6694194194194194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12810.24285649285649288No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12490.23678982012315347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10410.19735644735644733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9720.18427518427518427No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8500.16114599447932781No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7910.14996056662723328No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7850.14882306548973215No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7420.14067097400430734No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7320.13877513877513878No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7140.13536263536263535No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6600.12512512512512514No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6570.12455637455637456No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6070.11507719841053175No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5570.10559802226468894No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5550.10521885521885521No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5480.10389177055843722No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5420.10275426942093607No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5400.10237510237510238No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5350.10142718476051808No Hit

[OK]Adapter Content

Adapter graph