FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494766
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43880.8868839006722369No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25140.5081189895829544No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16790.33935234029824196No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12800.2587081569873435No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12430.2512298743244281No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12290.24840025385737904No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10300.20817922007575299No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10250.20716864133752116No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9990.20191363189871575No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC9940.20090305316048393No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9620.19443534923580036No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC9040.18271263587231135No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8700.17584070045233505No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8650.17483012171410325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8600.1738195429758714No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7570.15300162096829611No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7290.147342380034198No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7090.14330006508127074No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6690.13521543517541626No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6500.1313752359701354No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6270.12672657377426905No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6250.12632234227897632No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6050.12228002732604909No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG6010.12147156433546363No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.11803559662547547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.11136577695314553No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5460.11035519821491371No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5400.10914250372903556No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.1083340407384501No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5070.10247268405670559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)