FastQCFastQC Report
Sun 21 May 2023
EGAF00007942363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505810
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16180.31988296000474487No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14180.28034242106719914No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10650.21055336984243095No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9760.19295783001522313No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9170.18129337102864712No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8710.1721990470730116No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7810.15440580455111602No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7550.14926553448923507No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7380.1459045886795437No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6390.12633202190545859No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6340.12534350843201994No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6280.12415729226389355No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6230.1231687787904549No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6140.12138945453826536No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6100.12059864375951444No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5960.11783080603388625No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5910.1168422925604476No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5620.11110891441450346No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5380.10636404974199798No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5380.10636404974199798No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5100.1008283742907416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)