FastQCFastQC Report
Wed 31 May 2023
EGAF00007942364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505810
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46840.9260394219173207No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18200.359818904331666No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16340.3230462031197485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10650.21055336984243095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10610.20976255906368005No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9930.19631877582491447No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9060.1791186413870821No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8900.17595539827207843No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8280.16369783120143927No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7730.1528241829936142No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7400.14629999406891916No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7210.1425436428698523No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7050.13938039975484867No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.1312745892726518No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6550.12949526502046224No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6530.12909985963108678No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6340.12534350843201994No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6110.12079634645420216No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6090.12040094106482671No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5990.11842391411794942No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5900.11664458986575987No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5870.11605148178169668No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.11545837369763351No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5370.10616634704731026No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5190.10260769854293114No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5160.10201459045886796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)