FastQCFastQC Report
Sun 21 May 2023
EGAF00007942367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513891
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17780.34598776783403484No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15390.29947985078547784No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13170.25628002825501905No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11790.22942608451986898No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10890.21191264295346682No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8940.17396685289292865No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7920.15411828578433948No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA7310.14224806427822242No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6910.13446431247093255No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6620.1288210924106474No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6510.1266805606636427No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6100.11870221506117057No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5880.11442115156716114No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5790.11266980741052092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)