FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513891
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46370.9023314282600786No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38220.7437374851865474No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13310.2590043413875705No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11870.23098283488132698No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10610.2064640166883639No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9640.18758841855568592No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8840.1720209149411062No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7570.14730750295296086No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7350.1430264394589514No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6710.13057243656728762No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6590.12823731102510066No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6280.122204903374451No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6250.12162112198890425No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6160.11986977783226403No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5540.10780496253096473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)