FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522922
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20310.38839444506064No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14110.2698299172725569No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9870.1887470789142549No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9730.18606981538355624No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7240.13845277115898738No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6980.13348071031626133No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6850.1309946798948983No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6750.1290823488015421No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6370.12181549064678862No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6360.12162425753745301No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5910.11301876761735019No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5470.10460451080658302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)