FastQCFastQC Report
Sun 21 May 2023
EGAF00007942375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514966
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12760.24778334880361033No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC12200.23690884446740174No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10330.20059576748756228No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9930.19282826439027043No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG9010.17496300726649916No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7620.14797093400340994No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7330.14233949425787332No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5260.10214266572938796No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC5200.10097754026479418No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5180.10058916510992959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)