FastQCFastQC Report
Sun 21 May 2023
EGAF00007942376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514966
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21990.42701848277362No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13520.2625416046884649No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12890.25030778731023023No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12590.24448215998726128No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9990.1939933898548642No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9980.19379920227743191No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9640.18719682464473383No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9500.18447819856068168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8770.17030250540812403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6680.12971730172477405No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5710.1108811067138413No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5410.10505547939087241No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5380.10447291665857553No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5370.10427872908114322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)