FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511551
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC44750.8747905878397266No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT42970.8399944482563811No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC38950.7614099082984883No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT37990.7426434509951109No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC37750.7379518366692666No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA31210.6101053462900082No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG28230.551851135077441No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA25340.4953562792370653No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22880.44726723239716076No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC22570.4412072305596118No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22380.43749303588498506No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT21440.4191175464420947No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT20810.4068020588367533No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20510.40093754092944794No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA17680.3456155886705334No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16590.32430784027399023No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG13680.2674220165731276No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13340.2607755629448481No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13300.25999362722387404No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC13050.2551065289677862No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT12630.24689620389755862No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11320.22128780903565823No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10150.19841618919716705No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9940.19431102666205324No Hit
CACGATTTCGGCGAAGGTCATGTTAGCCGCGATGCTACGCGGAA9920.1939200588015662No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9880.19313812308059214No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9770.1909877998479135No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA9630.1882510248245043No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9440.18453683014987754No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8940.1747626336377018No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG8800.17202585861429262No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8520.16655230856747422No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7830.1530639173806717No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7540.14739488340360982No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7450.14563552803141816No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7440.14544004410117467No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7290.14250778514752194No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7040.13762068689143409No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6940.13566584758899894No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6440.12589165107682324No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6190.12100455282073538No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA6050.11826777779732618No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5890.11514003491342995No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5460.10673422591295882No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5220.10204261158711447No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5210.10184712765687097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)