FastQCFastQC Report
Wed 31 May 2023
EGAF00007942379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491962
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC42500.8638878612575769No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT41710.8478297104247889No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC36080.7333899772746675No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT35980.7313572999540615No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC35490.7213971810830918No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA29400.5976071322581825No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG26820.545164057386546No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA25100.5102020074721219No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22350.4543033811554551No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC21180.4305210565043642No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21040.42767530825551564No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19670.39982762896321256No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT19450.3953557388578792No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT19170.3896642423601823No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA18220.3703538078144247No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15520.315471520158061No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG13240.26912647724824273No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT12970.26363824848260636No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12720.2585565551810912No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT12270.24940950723836394No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC11670.23721344331472755No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11650.23680690785060637No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9420.19147820360109113No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9250.18802265215606084No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9100.18497363617515175No Hit
CACGATTTCGGCGAAGGTCATGTTAGCCGCGATGCTACGCGGAA9000.18294095885454567No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8950.18192462019424263No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA8730.1774527300889093No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8630.17542005276830325No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8610.17501351730418202No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7980.16220765018436384No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7850.15956516966757595No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7640.1552965472943032No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG7140.1451331606912729No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7110.1445233574950911No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6960.141474341514182No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6580.13375016769587894No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6220.12643252934169713No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA6210.12622926160963652No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6030.12257044243254561No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5800.11789528459515165No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5600.11382992995393953No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5430.11037437850890922No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5420.11017111077684862No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA5090.10346327561884862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)