FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484889
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43800.9032995180340243No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9660.199220852607504No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9550.19695229217408522No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9430.19447749897399197No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8870.18292846404022364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8220.16952333420638538No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8090.1668423082396177No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5600.11549034933768347No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5530.11404671997096243No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5520.113840487204288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5510.11363425443761356No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5240.10806596973740382No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5150.1062098748373339No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4930.10167275397049635No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4910.10126028843714747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)