FastQCFastQC Report
Wed 31 May 2023
EGAF00007942384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467025
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43040.9215780739789091No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37660.8063808147315453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18820.40297628606605645No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16120.34516353514265835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16050.3436646860446443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11060.23681815748621596No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8250.17665007226593865No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7230.15480969969487715No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6850.14667309030565817No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4990.10684652855842834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)