FastQCFastQC Report
Sun 21 May 2023
EGAF00007942385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466808
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9750.20886531507600556No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9400.2013675858168669No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8870.1900138815101712No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7380.15809497694983804No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6540.14010042672790526No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6290.1347449058285205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6080.1302462682730373No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5580.11953522647426779No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5450.11675035560658772No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5400.11567925142671076No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5010.10732463882367055No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4860.1041113262840397No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4830.10346866377611352No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4760.10196911792428578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)