FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466808
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43610.9342170656886771No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18100.38773971311545646No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12330.26413429075765626No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10360.22193278607050437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9830.21057908176380868No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8530.18273037308700793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7190.15402478106630563No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6760.14481328511936387No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.14288529759558535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6440.13795821836815136No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6120.13110315161693886No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5670.1214632139980463No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5330.11417970557488304No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5160.1105379513633014No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4900.10496820962794125No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4830.10346866377611352No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4760.10196911792428578No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4730.10132645541635961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)